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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015844821.1_cds_XP_016509116.1_22073
CDS Infomation

[gene=LOC107826629] [db_xref=GeneID:107826629] [protein=endonuclease MutS2-like isoform X2] [protein_id=XP_016509116.1] [location=join(39583..39852,40086..40211,40356..40523,40606..40689,40849..40899,42996..43052,43241..43323,44879..45002,45081..45140,45763..46005,51031..51078,51211..51341,51425..51507,52439..52542,53005..53075,54867..55165,55331..55488)] [gbkey=CDS]
Sequence

ATGATGCTCCTTTCAATTTCACTGCTTCCCAATTCATCAGCCTCATTCGCCACCGTAGCA
TTTGCCGTCCCAAAAATTCACAGTGTTTTCAGGCAGTCCATTCGATTTAAAGTCCATGCC
TTCTTGAATAAACCACTGGACTCGAGCTCTGCACCGGCCTCTAATCGACCATCCATACTT
GTCGACAGTCTCAGAGTCCTCGAATGGGACAAATTATGCGATTCCGTCGCTTCCTTCGCC
GGCACTTCCTTAGGCAAAATAGCTCTCAAGGAACAACTAGGGTACTTGAATCAAACATTT
GAAGATAGCCTCAGACTCTTAGAGGAAACCAATGCTGCTGTAGAGATGAATAAGTACGGT
GCCATGATGGACTTTAACGGCATTGATATCGAGCTGGTCAAAACTGCCGTACAAGTTGCA
CGCAGAGGTTTTCCTGTCAGTGGGACTGAAGCAATGAACGTTGTAGCGCTACTGCAGTTT
GTGGAAATGTTGCAGTCAAATGTCAAAGCTGCAATCAAGCAAGACGCAGAATGGTATCAG
CGCTTTATGCCTCTCACAGAAATGATTATGGAACTAACCATAAGCAGATCACTAGTGAGG
TTCATACAACAATTAGTTGATGAAGATGGTTCCGTCAAGGATTCTGCGAGCTCTTCCTTG
AAACAATCTCGTGATCAAGTTCGCCTTCTCGAAAGAAAGTTATACCAGTTGATGGAGAGC
ATAATCAGGAACGGAGTGGAAGAAGTGTCTTCTATGGAAGTGAGTGAAATTGATGGCAGA
TGGTGCATTAGATCAGGATTTAATCAGCGAATGACCTTTGAAGGGCTATTGTTGTCCAGT
GCTTCAGGTACTGGAAGTGTTGTAGAACCTCTCTCAGCAGTTCCAATGAATGATGCACTC
CAGCAAGCCAAGGCATCTGTGGCAAAGGCTGAAGCTGATGTGCTCCTGAAGATAACACAA
AAGATGCAAGAAGAAATTGATAACATAGAAAGCATTTTCAGCGTTATGGTTAGGCTTGAT
GTGATCAACGCAAGAGCACGATATAGTCTTGCATTTGGAGGCGCTTGTCCAGACTTATTT
TTGCAACAAGATAAGGATAGCTTTTCAGGTACTGATGCTTCATTGGTGGCAAGAACCTCA
GTGGCACTGCATCCTACACGGAGGAAATGGACAATGTATCTGCCGAAAGCTTATCATCCT
TTATTAGTTCAAAAACATCAGCAGGCTCTACAGAAGGCCATGAAAGATGTCAAGAACGCT
AATGCTAAAATCCGGTCTCACTCAACAGACATGTCACTTGTGCTATTAGATGAAGTAGGG
GCTGGGACAAATCCTCTAGAAGGAGCTGCACTTGGGATGTCACTACTGGAATCTTTTGCA
GAAGCTGGGAGTTTGTTGACTATAGCTACAACACATCATGGAGAACTTAAAACCCTTAAA
TACAGCAATCATGCCTTTGAAAATGCATGTATGGAGTTTGACGAAATGAAGTTGAAACCA
ACTTATAGGATTCTTTGGGGAATACCAGGACGGTCAAATGCAATCAATATAGCCGAAAGG
CTCAGGATACCTGATATCATTGTGCACAAGGCTCGTGAACTTTACGGAGCTGCTAGTGCA
GAAATCAATGAGGTTATACTTGACATGGAGAGGTTTAAGCAGAACTTTCACGAGCAAGTT
CGTGAATCACAGCATCTTCTGAAACTCACTAAAGGTCTCCATAACAAGTTGCTTATAGCC
CGAAAGACAGTGAAAGAACACAGCATTAATCAAAGATACAGAAAGGTACAAGAGATATCT
GAGGCAGCAGCAGCTGCACGATCTTCCATTCAGAAGAGAGCACGAGAATATCGTGCAGTT
TCAAGTCAACAATCCCAGAAAATACTGGAAAGTAATGGACAAACATCAGCTACAAAGAGT
GAAGCTAAAGTGGAAAAAAGTAAAATTTCAGAGGCAACTCCTGCGGTGTTCTCTGCCAGT
ACATCCAGGTTACCTTTATCAGAAAGAAGGAAACTTCCAAGTGTTGGTGATTCAGTCTTT
GTTCCTTCACTTAACAAGCAAGCTTTAGTCCTAAAAGTGGATCCTTCTAGAGAAGAACTA
TTAGTACAAGCTGGTAACATGAAGCTTAAGCTTAAAGTAACAGATGTATTCACCAGGTAG

Peptide Sequence

PEP ID

XP_016509116.1
PEP Infomation

PREDICTED: endonuclease MutS2-like isoform X2 [Nicotiana tabacum]
Sequence

MMLLSISLLPNSSASFATVAFAVPKIHSVFRQSIRFKVHAFLNKPLDSSSAPASNRPSIL
VDSLRVLEWDKLCDSVASFAGTSLGKIALKEQLGYLNQTFEDSLRLLEETNAAVEMNKYG
AMMDFNGIDIELVKTAVQVARRGFPVSGTEAMNVVALLQFVEMLQSNVKAAIKQDAEWYQ
RFMPLTEMIMELTISRSLVRFIQQLVDEDGSVKDSASSSLKQSRDQVRLLERKLYQLMES
IIRNGVEEVSSMEVSEIDGRWCIRSGFNQRMTFEGLLLSSASGTGSVVEPLSAVPMNDAL
QQAKASVAKAEADVLLKITQKMQEEIDNIESIFSVMVRLDVINARARYSLAFGGACPDLF
LQQDKDSFSGTDASLVARTSVALHPTRRKWTMYLPKAYHPLLVQKHQQALQKAMKDVKNA
NAKIRSHSTDMSLVLLDEVGAGTNPLEGAALGMSLLESFAEAGSLLTIATTHHGELKTLK
YSNHAFENACMEFDEMKLKPTYRILWGIPGRSNAINIAERLRIPDIIVHKARELYGAASA
EINEVILDMERFKQNFHEQVRESQHLLKLTKGLHNKLLIARKTVKEHSINQRYRKVQEIS
EAAAAARSSIQKRAREYRAVSSQQSQKILESNGQTSATKSEAKVEKSKISEATPAVFSAS
TSRLPLSERRKLPSVGDSVFVPSLNKQALVLKVDPSREELLVQAGNMKLKLKVTDVFTR

Transcript Sequence

Gene sequence data has not been registered.